@prefix owl: . @prefix rdfs: . @prefix skos: . rdfs:label "independent continuant" ; rdfs:comment "A continuant that is a bearer of quality and realizable entity entities, in which other entities inhere and which itself cannot inhere in anything." ; skos:definition "A continuant that is a bearer of quality and realizable entity entities, in which other entities inhere and which itself cannot inhere in anything." . rdfs:label "process" ; rdfs:comment "An occurrent that has temporal proper parts and for some time t, p s-depends_on some material entity at t." ; skos:definition "An occurrent that has temporal proper parts and for some time t, p s-depends_on some material entity at t." . rdfs:label "specifically dependent continuant" ; rdfs:comment "A continuant that inheres in or is borne by other entities. Every instance of A requires some specific instance of B which must always be the same." ; skos:definition "A continuant that inheres in or is borne by other entities. Every instance of A requires some specific instance of B which must always be the same." . rdfs:label "generically dependent continuant" ; rdfs:comment "A continuant that is dependent on one or other independent continuant bearers. For every instance of A requires some instance of (an independent continuant type) B but which instance of B serves can change from time to time." ; skos:definition "A continuant that is dependent on one or other independent continuant bearers. For every instance of A requires some instance of (an independent continuant type) B but which instance of B serves can change from time to time." . rdfs:label "realized in" ; rdfs:comment "Paraphrase of elucidation: a relation between a realizable entity and a process, where there is some material entity that is bearer of the realizable entity and participates in the process, and the realizable entity comes to be realized in the course of the process" ; skos:definition "Paraphrase of elucidation: a relation between a realizable entity and a process, where there is some material entity that is bearer of the realizable entity and participates in the process, and the realizable entity comes to be realized in the course of the process" . rdfs:label "realizes" ; rdfs:comment "Paraphrase of elucidation: a relation between a process and a realizable entity, where there is some material entity that is bearer of the realizable entity and participates in the process, and the realizable entity comes to be realized in the course of the process" ; skos:definition "Paraphrase of elucidation: a relation between a process and a realizable entity, where there is some material entity that is bearer of the realizable entity and participates in the process, and the realizable entity comes to be realized in the course of the process" . rdfs:label "obsolete preceded by" ; rdfs:comment """accidentally included in BFO 1.2 proposal - should have been BFO_0000062""" ; skos:definition """accidentally included in BFO 1.2 proposal - should have been BFO_0000062""" . rdfs:label "occurs in" ; rdfs:comment "Paraphrase of definition: a relation between a process and an independent continuant, in which the process takes place entirely within the independent continuant" ; skos:definition "Paraphrase of definition: a relation between a process and an independent continuant, in which the process takes place entirely within the independent continuant" . rdfs:label "contains process" ; rdfs:comment "Paraphrase of definition: a relation between an independent continuant and a process, in which the process takes place entirely within the independent continuant" ; skos:definition "Paraphrase of definition: a relation between an independent continuant and a process, in which the process takes place entirely within the independent continuant" . rdfs:label "cell" ; rdfs:comment "The definition of cell is intended to represent all cells, and thus a cell is defined as a material entity and not an anatomical structure, which implies that it is part of an organism (or the entirety of one)." ; skos:definition "The definition of cell is intended to represent all cells, and thus a cell is defined as a material entity and not an anatomical structure, which implies that it is part of an organism (or the entirety of one)." . rdfs:label "neuron" ; rdfs:comment "These cells are also reportedly CD4-negative and CD200-positive. They are also capable of producing CD40L and IFN-gamma." ; skos:definition "These cells are also reportedly CD4-negative and CD200-positive. They are also capable of producing CD40L and IFN-gamma." . rdfs:label "environmental system" ; rdfs:comment "In ENVO's alignment with the Basic Formal Ontology, this class is being considered as a subclass of a proposed BFO class \"system\". The relation \"environed_by\" is also under development. Roughly, a system which includes a material entity (at least partially) within its site and causally influences that entity may be considered to environ it. Following the completion of this alignment, this class' definition and the definitions of its subclasses will be revised." ; skos:definition "In ENVO's alignment with the Basic Formal Ontology, this class is being considered as a subclass of a proposed BFO class \"system\". The relation \"environed_by\" is also under development. Roughly, a system which includes a material entity (at least partially) within its site and causally influences that entity may be considered to environ it. Following the completion of this alignment, this class' definition and the definitions of its subclasses will be revised." . rdfs:label "habitat" ; rdfs:comment "A habitat's specificity to an ecological population differentiates it from other environment classes. See Buttigieg et al. (2016; https://doi.org/10.1186/s13326-016-0097-6) for an explanation of ENVO's treatement of habitats. 3,849 of such habitat classes are available here: https://github.com/EnvironmentOntology/envo-habitats" ; skos:definition "A habitat's specificity to an ecological population differentiates it from other environment classes. See Buttigieg et al. (2016; https://doi.org/10.1186/s13326-016-0097-6) for an explanation of ENVO's treatement of habitats. 3,849 of such habitat classes are available here: https://github.com/EnvironmentOntology/envo-habitats" . rdfs:label "has increased levels of" ; rdfs:comment "This relation is present in ENVO to support compositional classes such as \"X-enriched soil\". These will later be formalized, and a different relation from RO may be chosen." ; skos:definition "This relation is present in ENVO to support compositional classes such as \"X-enriched soil\". These will later be formalized, and a different relation from RO may be chosen." . rdfs:label "gene product or complex activity" ; rdfs:comment "Note that, in addition to forming the root of the molecular function ontology, this term is recommended for the annotation of gene products whose molecular function is unknown. When this term is used for annotation, it indicates that no information was available about the molecular function of the gene product annotated as of the date the annotation was made; the evidence code 'no data' (ND), is used to indicate this. Despite its name, this is not a type of 'function' in the sense typically defined by upper ontologies such as Basic Formal Ontology (BFO). It is instead a BFO:process carried out by a single gene product or complex." ; skos:definition "Note that, in addition to forming the root of the molecular function ontology, this term is recommended for the annotation of gene products whose molecular function is unknown. When this term is used for annotation, it indicates that no information was available about the molecular function of the gene product annotated as of the date the annotation was made; the evidence code 'no data' (ND), is used to indicate this. Despite its name, this is not a type of 'function' in the sense typically defined by upper ontologies such as Basic Formal Ontology (BFO). It is instead a BFO:process carried out by a single gene product or complex." . rdfs:label "biological process" ; rdfs:comment "Note that, in addition to forming the root of the biological process ontology, this term is recommended for the annotation of gene products whose biological process is unknown. When this term is used for annotation, it indicates that no information was available about the biological process of the gene product annotated as of the date the annotation was made; the evidence code 'no data' (ND), is used to indicate this." ; skos:definition "Note that, in addition to forming the root of the biological process ontology, this term is recommended for the annotation of gene products whose biological process is unknown. When this term is used for annotation, it indicates that no information was available about the biological process of the gene product annotated as of the date the annotation was made; the evidence code 'no data' (ND), is used to indicate this." . rdfs:label "kinase activity" ; rdfs:comment "Note that this term encompasses all activities that transfer a single phosphate group; although ATP is by far the most common phosphate donor, reactions using other phosphate donors are included in this term." ; skos:definition "Note that this term encompasses all activities that transfer a single phosphate group; although ATP is by far the most common phosphate donor, reactions using other phosphate donors are included in this term." . rdfs:label "ratio" ; rdfs:comment "Examples: height to weight; brain size to body size; root to shoot ratio; urinary sodium to potassium ratio. waist-hip ratio." ; skos:definition "Examples: height to weight; brain size to body size; root to shoot ratio; urinary sodium to potassium ratio. waist-hip ratio." . rdfs:label "characteristic of" ; rdfs:comment "Note that this relation was previously called \"inheres in\", but was changed to be called \"characteristic of\" because BFO2 uses \"inheres in\" in a more restricted fashion. This relation differs from BFO2:inheres_in in two respects: (1) it does not impose a range constraint, and thus it allows qualities of processes, as well as of information entities, whereas BFO2 restricts inheres_in to only apply to independent continuants (2) it is declared functional, i.e. something can only be a characteristic of one thing." ; skos:definition "Note that this relation was previously called \"inheres in\", but was changed to be called \"characteristic of\" because BFO2 uses \"inheres in\" in a more restricted fashion. This relation differs from BFO2:inheres_in in two respects: (1) it does not impose a range constraint, and thus it allows qualities of processes, as well as of information entities, whereas BFO2 restricts inheres_in to only apply to independent continuants (2) it is declared functional, i.e. something can only be a characteristic of one thing." . rdfs:label "function of" ; rdfs:comment "This relation is modeled after the BFO relation of the same name which was in BFO2, but is used in a more restricted sense - specifically, we model this relation as functional (inherited from characteristic-of). Note that this relation is now removed from BFO2020." ; skos:definition "This relation is modeled after the BFO relation of the same name which was in BFO2, but is used in a more restricted sense - specifically, we model this relation as functional (inherited from characteristic-of). Note that this relation is now removed from BFO2020." . rdfs:label "quality of" ; rdfs:comment "This relation is modeled after the BFO relation of the same name which was in BFO2, but is used in a more restricted sense - specifically, we model this relation as functional (inherited from characteristic-of). Note that this relation is now removed from BFO2020." ; skos:definition "This relation is modeled after the BFO relation of the same name which was in BFO2, but is used in a more restricted sense - specifically, we model this relation as functional (inherited from characteristic-of). Note that this relation is now removed from BFO2020." . rdfs:label "role of" ; rdfs:comment "This relation is modeled after the BFO relation of the same name which was in BFO2, but is used in a more restricted sense - specifically, we model this relation as functional (inherited from characteristic-of). Note that this relation is now removed from BFO2020." ; skos:definition "This relation is modeled after the BFO relation of the same name which was in BFO2, but is used in a more restricted sense - specifically, we model this relation as functional (inherited from characteristic-of). Note that this relation is now removed from BFO2020." . rdfs:label "disposition of" ; rdfs:comment "This relation is modeled after the BFO relation of the same name which was in BFO2, but is used in a more restricted sense - specifically, we model this relation as functional (inherited from characteristic-of). Note that this relation is now removed from BFO2020." ; skos:definition "This relation is modeled after the BFO relation of the same name which was in BFO2, but is used in a more restricted sense - specifically, we model this relation as functional (inherited from characteristic-of). Note that this relation is now removed from BFO2020." . rdfs:label "obsolete in neural circuit with" ; rdfs:comment "Obsoleted as no longer a useful relationship (all neurons in an organism are in a neural circuit with each other)." ; skos:definition "Obsoleted as no longer a useful relationship (all neurons in an organism are in a neural circuit with each other)." . rdfs:label "obsolete upstream in neural circuit with" ; rdfs:comment "Obsoleted as no longer a useful relationship (all neurons in an organism are in a neural circuit with each other)." ; skos:definition "Obsoleted as no longer a useful relationship (all neurons in an organism are in a neural circuit with each other)." . rdfs:label "obsolete downstream in neural circuit with" ; rdfs:comment "Obsoleted as no longer a useful relationship (all neurons in an organism are in a neural circuit with each other)." ; skos:definition "Obsoleted as no longer a useful relationship (all neurons in an organism are in a neural circuit with each other)." . rdfs:label "bounding layer of" ; rdfs:comment "A relationship that applies between a continuant and its outer, bounding layer. Examples include the relationship between a multicellular organism and its integument, between an animal cell and its plasma membrane, and between a membrane bound organelle and its outer/bounding membrane." ; skos:definition "A relationship that applies between a continuant and its outer, bounding layer. Examples include the relationship between a multicellular organism and its integument, between an animal cell and its plasma membrane, and between a membrane bound organelle and its outer/bounding membrane." . rdfs:label "coincident with" ; rdfs:comment "Example: if we define region of chromosome as any subdivision of a chromosome along its long axis, then we can define a region of chromosome that contains only gene x as 'chromosome region' that coincident_with some 'gene x', where the term gene X corresponds to a genomic sequence." ; skos:definition "Example: if we define region of chromosome as any subdivision of a chromosome along its long axis, then we can define a region of chromosome that contains only gene x as 'chromosome region' that coincident_with some 'gene x', where the term gene X corresponds to a genomic sequence." . a owl:Ontology ; rdfs:label "Relations Ontology 2015" ; rdfs:comment "Ontology with integrated definitions from OntServe database" .